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ingest api
Overview
Operations
Retrieve information about this service
Add credentials for an S3 bucket
Get credentials for an S3 bucket
Delete credentials for an S3 bucket
List users in role_type
Is user in this role?
Assign user to role
Remove user from role
List registered programs
Add authorization information for a new program (or overwrite authorization information for an existing program).
Get authorization information for a program
Delete a program
Get a program's DAC authorizations
Add pending user
List pending users
Approve pending users
Delete pending users
Is a user pending?
Approve pending user
Reject pending user
List preapproved users
Add preapproved users
Delete preapproved users
Check preapproved list for user
Add preapproved user
Remove preapproved user
List authorization information about a user
Revoke CanDIG authorization for a user
Authorize a program for a user
Get a DAC authorization for a user
Remove a DAC authorization for a user
Ingest CanDIG data
Ingest CanDIG data
Ingest CanDIG data
Check status of ingest
Get a new token
query api
Overview
Operations
Retrieve information about this service
Retrieve patients matching the filters
Retrieve summary statistics on genomic data
Retrieve summary statistics on the metadata for each program, as well as the current site.
Retrieve summary statistics
Get discovery overview endpoint calls
Retrieve the user key for the currently logged-in user
katsu api
Overview
authorized
List Biomarkers
List Comorbidities
Get Donor With Clinical Data
List Donors
List Exposures
List Follow Ups
List Primary Diagnoses
List Programs
Query Donors
List Radiations
List Sample Registrations
List Specimens
List Surgeries
List Systemic Therapies
List Treatments
overview
Discover Diagnosis Age Count
Discover Gender Count
Discover Individual Count
Discover Patients Per Program
Discover Primary Site Count
Discover Program Count
Discover Treatment Type Count
discovery
Discover Programs
Discover Sidebar List
download
Search Clinical Data
explorer
Explorer Donor
ingest
Create Biomarkers
Create Comorbidities
Create Donors
Create Exposures
Create Followups
Create Primary Diagnoses
Create Programs
Create Radiations
Create Sample Registrations
Create Specimens
Create Surgeries
Create Systemic Therapies
Create Treatments
delete
Delete Program
Operations
Service Info
drs api
Overview
Operations
Retrieve information about this service
Add a DrsObject
Delete a DrsObject
List all programs
Create a program
Describe a program
Delete a program.
Get the status of a program
Objects
List all DRS objects
Get info about a DrsObject
Download a file associated with a drs object
Get a URL for fetching bytes
List all DRS objects related to a biosample.
htsget beacon api
Overview
Informational endpoints
Get information about the beacon
Operations
Get full Beacon result for a search
GET Endpoints
Search for variants
POST Endpoints
beacon_operations.post_search
htsget operations api
Overview
Reads
Overview
Get reads service info
Get alignment (reads) file download ticket
Stream alignment file part
Variants
Overview
Get variants service info
Get variant file download ticket
Stream variant file part
Service Info
Overview
Get reads service info
Get variants service info
Streaming
Overview
Stream alignment file part
Stream variant file part
Operations
Get the status of the indexer
Set the indexer on or off
Verify the integrity of the object
Index variant file for search
List all available gene names
Get transcript region for genes matching id
List all available gene names
Get transcript region for transcripts matching id
Get metadata about a biosample
Get metadata about biosamples in a program
Get metadata about multiple biosamples
federation api
Overview
Operations
operations.service_info
List registered servers
Add a server to the federation
Get a server
Unregister a server
List external service
Add an external service
Get an external service
Unregister a service
List registered services
Add a service to the federation
Get a service
Unregister a service
Send a request to the CanDIG network
GitHub
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Overview
GA4GH Beacon API Specification - Genomic Variations Endpoints
2.0.0
Section titled “GA4GH Beacon API Specification - Genomic Variations Endpoints 2.0.0”
TBD
Contact
beacon@ga4gh.org
Information
License:
Apache 2.0
OpenAPI version:
3.0.2
Operations
Section titled “Operations”
GET
/service-info
GET
/result/{queue_id}
GET
/g_variants
POST
/g_variants
