Create Specimens

POST

/v3/ingest/specimens/

Authorizations

• IngestAuth
• IngestTokenAuth

Request Body ^required

Array<object>

object

percent_tumour_cells_measurement_method

Any of:

CellsMeasureMethodEnum

string

Allowed values: Genomics Image analysis Pathology estimate by percent nuclei Other Not available

null

null

percent_tumour_cells_range

Any of:

PercentCellsRangeEnum

string

Allowed values: 0-19% 20-50% 51-100% Not available

null

null

program_id

required

string

reference_pathology_confirmed_diagnosis

Any of:

ConfirmedDiagnosisTumourEnum

string

Allowed values: Yes No Not done Not available

null

null

reference_pathology_confirmed_tumour_presence

Any of:

ConfirmedDiagnosisTumourEnum

string

Allowed values: Yes No Not done Not available

null

null

specimen_anatomic_location

Any of:

string

string

<= 32 characters /^[C][0-9]{2}(.[0-9]{1})?$|^Not available$/

null

null

specimen_collection_date

Any of:

object

object

null

null

specimen_laterality

Any of:

SpecimenLateralityEnum

string

Allowed values: Left Not applicable Right Not available

null

null

specimen_processing

Any of:

SpecimenProcessingEnum

string

Allowed values: Cryopreservation in liquid nitrogen (dead tissue) Cryopreservation in dry ice (dead tissue) Cryopreservation of live cells in liquid nitrogen Cryopreservation - other Formalin fixed & paraffin embedded Formalin fixed - buffered Formalin fixed - unbuffered Fresh Other Not available

null

null

specimen_storage

Any of:

StorageEnum

string

Allowed values: Cut slide Frozen in -70 freezer Frozen in liquid nitrogen Frozen in vapour phase Not Applicable OCT embedded Other Paraffin block RNA later frozen Not available

null

null

submitter_donor_id

required

string

submitter_primary_diagnosis_id

required

string

submitter_specimen_id

required

string

<= 64 characters /^[A-Za-z0-9\-\._]{1,64}$/

submitter_treatment_id

Any of:

string

string

<= 64 characters

null

null

tumour_grade

Any of:

TumourGradeEnum

string

Allowed values: Low grade High grade GX G1 G2 G3 G4 Low High Grade 1 Grade 2 Grade 3 Grade 4 Grade I Grade II Grade III Grade IV Grade Group 1 Grade Group 2 Grade Group 3 Grade Group 4 Grade Group 5 Not available

null

null

tumour_grading_system

Any of:

TumourGradingSystemEnum

string

Allowed values: FNCLCC grading system Four-tier grading system Gleason grade group system Grading system for GISTs Grading system for GNETs IASLC grading system ISUP grading system Nottingham grading system Nuclear grading system for DCIS Scarff-Bloom-Richardson grading system Three-tier grading system Two-tier grading system WHO grading system for CNS tumours Not available

null

null

tumour_histological_type

Any of:

string

string

<= 128 characters /^[8,9]{1}[0-9]{3}/[0,1,2,3,6,9]{1}[1-9]{0,1}$|^Not available$/

null

null

uuid

Any of:

string

string

null

null

Responses

200

OK